This directory contains data for all the sites for which we had cleaned data available by May 22 2008.

Data from these sites have been run through the scripts to scrub taxonomy and generate files for all scales at each site based on original data with abundances at smallest scale for each site.

Files and directories:
all.matrices
    -ecophyl format matrix
all.samples
    -phylocom format samples
low.samples.to.process
    -files to be processed
plot.structure.files
    -summaries of plot structure
scripts
    -R scripts to scrub data, generate files, and prune trees
site-metadata.txt
    -metadata on sites
smallest.scale.data.files.final
    -these are the original files for all sites - abundance data at smallest scale for each site
sparea.files
    -files for calculating species area curves
species.taxonomy.lookup.csv
    -lookup table for scrubbing original files species names to match tree
